Publications
- T.M. Phan and J.D. Schmit, “Conformational entropy limits the transition from nucleation to elongation in amyloid aggregation”, Biophys. J., In press (2022)
Link
- J.D. Schmit, M. Feric, and M. Dundr, “How Hierarchical Interactions Make Membraneless Organelles Tick Like Clockwork", Trends Biochem. Sci. 46, 525-534 (2021)
Link
- K. Bhandari, M.A. Cotten, J. Kim, M.K. Rosen, and J.D. Schmit, “Structure–Function Properties in Disordered Condensates", J. Phys. Chem. B 125, 467–476 (2021)
Link
bioRxiv
- T.T.M. Phan and J.D. Schmit, “Thermodynamics of Huntingtin Aggregation", Biophys. J., 118, 2989–2996 (2020)
Link
bioRxiv
- Z. Jia, J. D. Schmit, and J. Chen, “Amyloid assembly is dominated by misregistered kinetic traps on an unbiased energy landscape”, Proc. Nat. Acad. Sci., 117, 10322-10328 (2020)
Link
bioRxiv
PubMed
- J. D. Schmit, J. J. Bouchard, E. W. Martin, and T. Mittag, “Protein network structure enables switching between liquid and gel states”, J. Am. Chem. Soc., 142, 874-883 (2020)
Link
bioRxiv
PubMed
- T.M. Phan, S. Whitelam, and J.D. Schmit, “Catalystlike role of impurities in speeding layer-by-layer growth”, Phys. Rev. E 100, 042114 (2019)
Link
- S.S. Hopkins, A. Chakrabarti, and J.D. Schmit, “Effects of non-pairwise repulsion on nanoparticle assembly”, J. Chem. Phys. 151, 034901 (2019)
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Link
PubMed
- N. Ramallo, S. Paudel, and J.D. Schmit, “Cluster Formation and Entanglement in the Rheology of Antibody Solutions”, J. Phys. Chem. B 123, 3916-3923 (2019)
Link
- J.D. Schmit, N.L. Kariyawasam, V. Needham, and P.E. Smith, “SLTCAP: A simple method for calculating the number of ions needed for MD simulation”, J. Chem. Theory Comput. 14, 4, 1823-1827 (2018)
Link
PubMed
- C. Huang, E. Ghanati, and J.D. Schmit, “Theory of Sequence Effects in Amyloid Aggregation”, J. Phys. Chem. B 122, 5567-5578 (2018)
Link
PubMed
- Y.R. Dahal and J.D. Schmit, “Ion Specificity and Nonmonotonic Protein Solubility from Salt Entropy”, Biophys. J 114, 76 (2018)
Link
PubMed
- Z. Jia, A. Beugelskijk, J. Chen, and J.D. Schmit, “The Levinthal Problem in Amyloid Aggregation: Sampling of a Flat Reaction Space”, J. Phys. Chem. B 121, 1576 (2017)
Link
PubMed
- L. Zhang and J.D. Schmit, “Theory of Amyloid Fibril Nucleation from Folded Proteins”, Israel J. Chem. 57, 738 (2017)
Link
PubMed
- L. Zhang and J.D. Schmit, “Pseudo-one-dimensional nucleation in dilute polymer solutions”, Phys. Rev. E Rapid Communication 93, 060401(R) (2016)
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Link
PubMed
- S. Whitelam, Y.R. Dahal, and J.D. Schmit, “Minimal physical requirements for crystal growth self-poisoning”, J. Chem. Phys. 144, 064903 (2016)
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Link
PubMed
- T. Miti, M. Mulaj, J.D. Schmit, and M. Muschol, “Stable, Metastable, and Kinetically Trapped Amyloid Aggregate Phases”, Biomacromolecules, 16, 326-335 (2015).
Link
PubMed
- J.D. Schmit, F. He, S. Mishra, R.R. Ketchem, C.E. Woods, and B.A. Kerwin, “Entanglement model of antibody viscosity”, J. Phys. Chem. B, 118, 5044-5049 (2014)
Link
- S. Whitelam, L.O. Hedges, and J.D. Schmit, “Self-assembly at a nonequilibrium critical point”, Phys. Rev. Lett. 112, 155504 (2014)
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Link
- N. Duff, Y.R. Dahal, J.D. Schmit, and B. Peters, “Salting out the polar polymorph: Analysis by alchemical solvent transformation, J. Chem. Phys. 140, 014501 (2014)
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Link
- J.D. Schmit, “Kinetic theory of amyloid fibril templating”, J. Chem. Phys. 138, 185102 (2013)
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Link
- L.R. Nemzer, B.N. Flanders, J.D. Schmit, A. Chakrabarti, and C.M. Sorensen, “Ethanol shock and lysozyme aggregation”, Soft Matter 9, 2187-2196 (2013)
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Link
- J. D. Schmit and K. Dill, “Growth rates of protein crystals”, J. Am. Chem. Soc. 134(9), 3934–3937 (2012)
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Link
Supplement
PubMed
- L. O. Narhi, J. Schmit, K. Bechtold-Peters, and D. Sharma, “Classification of protein aggregates”, J. Pharm. Sci. 101(2), 493-498 (2012)
Link
PubMed
- K. A. Dill, K. Ghosh, and J. D. Schmit, “Reply to Vazquez: Optimal density is robust to variations in calculation”, Proc. Nat. Acad. Sci. 109, E534 (2012)
Link
PubMed
- K. A. Dill, K. Ghosh, and J. D. Schmit, “Physical limits of cells and proteomes”, Proc. Nat. Acad. Sci. 108, 17876-17882 (2011)
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Link
PubMed
- J. D. Schmit, S. Whitelam, and K. Dill, “Electrostatics
and aggregation: how charge can turn a crystal into a gel”, J. Chem. Phys. 135, 085103 (2011)
PDF
Link
arXiv
PubMed
- J. D. Schmit, K. Ghosh, and K. Dill, “Why do amyloid
molecules assemble into oligomers and fibrils?”,
Biophys. J.
100, 450-458 (2011)
Link
arXiv
PubMed
- J. D. Schmit and K. Dill, “The stabilities of protein
crystals”, J. Phys. Chem. B 114, 4020 (2010)
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Link
PubMed
Supplement
- J. D. Schmit, E. Kamber, and J. Kondev, “Lattice Model of Diffusion-Limited Bimolecular Chemical Reactions in Confined Environments”, Phys. Rev. Lett. 102, 218302
(2009)
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Link
arXiv
- J. D. Schmit and A. J. Levine, “Statistical Model for
Intermolecular Adhesion in Conjugated
Polymers”, Phys. Rev. Lett. 100, 198303 (2008)
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Link
arXiv
- A. Rahmanisisan, C. Castelnovo, J. D. Schmit, and C. Chamon, "Dynamics of single polymers under extreme confinement", J. Stat. Mech. 9, P09022 (2007)
Link
arXiv
- J. D. Schmit and A. J. Levine, “Intermolecular adhesion in conducting polymers”, Phys. Rev. E 71, 051802 (2005)
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Link
arXiv
- J. Schmit, R. Menes, and P.A. Pincus, “Dielectric-induced counterion partitioning and its effect on membrane rigidity”, Phys. Rev. E 66, 061502 (2002)
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Link
articles by Jeremy Schmit on the arXiv
articles by Jeremy Schmit on the bioRxiv